Aye Tim,
As SteveL says.

If you have a copy of the Yamaha SRX workshop manual or the Clymer XT600 & TT600 1983 - 1989 manual the following should help.
Yamaha SRX manualPage 3 - 41 Crankcases are assembled.
Page 3 - 42 Install shift return spring, followed by the kickstart assembly.
Page 3 - 43 Oil pump installation.
Page 3 - 44 Clutch installation.
These are the manual 'orders of assembly', and having had a 'looksee' in a spare motor and rebuilt my current motor using these manuals, it seems OK.
Clymer manualPage 215 - 218 gives very clear instruction and photographic instruction upon dismantling and assembling the
EXTERNAL shift mechanism. Only if you are going to check the 'run out' of the shift shafts are you going to have to split the cases and that info is in Chapter 7, page 235.

Copies of the latter manual available from your local library or cheap from Fleabay.
I hope this helps.
My regards, Bill.