As Steve (one of the many) says - is it the studs holding the headers in the head or another connection further downstream?
If it's the head studs then you could try copious quantities of Plusgas (other penetrant fluids are available, but nowhere need as effective) and heat, you may be lucky and get the remaining studs undone. If not then it's time to drill:
1. Get the remaining top of the stud as smooth & flat as possible (Dremels are good at this)
2. Centre punch the stud as near to the actual centre as possible
3. Start with a 3mm drill and go slowly, lots of lubricant, keep the drill straight down the middle
4. Expand the pilot hole with a 4mm, then 5mm, then 6mm - hopefully the remnants of the stud will peel out of the head like an orange peel, if not:
5. Use a 6.8mm drill and VERY CAREFULLY open up the hole once more - this will expose the thread tops in the head if you've drilled straight down the middle. If you're off-centre you will be drilling out the thread, not a great heartache as the next step is to tap a new one, it'll just be a bit off-centre.
6. Using an M8 x 1.25 tap, slowly recut the thread, maximum 1/4 turn at a time and back off. Lots of lube, lots of patience. If you have trouble getting started try a quick zip with an 8mm drill just to get a lip of a couple of mm, no more.
7. Get some new studs from Honda (expensive) or a length of M8 x 1.25 threaded bar (stainless steel is good) and cut studs to suit (not as expensive). Remember to use some form of barrier when putting the new studs in - copaslip or the like.
Slightly skewed studs aren't a huge issue as the 'zorst clamps have a fair amount of leeway, as long as we're not in the 'Marty Feldman' league it should be OK.
Go on, ask me how I know this, I dare you!
Oh alright - edited to add some piccies:
Before:

During:
Phase 1 - smooth the stud (notice the cross on top - Dremel for centring - it worked OK)

Phase 2 - drill out

Phase 3 - tap

After - shiny new studs:

Oh yeah - make sure you get rid of all the swarf or your engine will have a very short lifespan with it's new zorst!
You're welcome